Suspiciously many broken parts

Symptom:

clickhouse don’t start with a message DB::Exception: Suspiciously many broken parts to remove.

Cause:

That exception is just a safeguard check/circuit breaker, triggered when clickhouse detects a lot of broken parts during server startup.

Parts are considered broken if they have bad checksums or some files are missing or malformed. Usually, that means the data was corrupted on the disk.

Why data could be corrupted?

1. the most often reason is a hard restart of the system, leading to a loss of the data which was not fully flushed to disk from the system page cache. Please be aware that by default ClickHouse doesn’t do fsync, so data is considered inserted after it was passed to the Linux page cache. See fsync-related settings in ClickHouse.

2. it can also be caused by disk failures, maybe there are bad blocks on hard disk, or logical problems, or some raid issue. Check system journals, use fsck / mdadm and other standard tools to diagnose the disk problem.

3. other reasons: manual intervention/bugs etc, for example, the data files or folders are removed by mistake or moved to another folder.

Action:

1. If you ok to accept the data loss: set up force_restore_data flag and clickhouse will move the parts to detached. Data loss is possible if the issue is a result of misconfiguration (i.e. someone accidentally has fixed xml configs with incorrect shard/replica macros, data will be moved to detached folder and can be recovered).

   sudo -u clickhouse touch /var/lib/clickhouse/flags/force_restore_data
   

   then restart clickhouse, the table will be attached, and the broken parts will be detached, which means the data from those parts will not be available for the selects. You can see the list of those parts in the system.detached_parts table and drop them if needed using ALTER TABLE ... DROP DETACHED PART ... commands.

   If you are ok to tolerate bigger losses automatically you can change that safeguard configuration to be less sensitive by increasing max_suspicious_broken_parts setting:

   cat /etc/clickhouse-server/config.d/max_suspicious_broken_parts.xml
   <?xml version="1.0"?>
   <yandex>
        <merge_tree>
            <max_suspicious_broken_parts>50</max_suspicious_broken_parts>
        </merge_tree>
   </yandex>
   

   this limit is set to 10 by default, we can set a bigger value (50 or 100 or more), but the data will lose because of the corruption.

   Check also a similar setting max_suspicious_broken_parts_bytes.
   See https://clickhouse.com/docs/en/operations/settings/merge-tree-settings/

2. If you can’t accept the data loss - you should recover data from backups / re-insert it once again etc.

   If you don’t want to tolerate automatic detaching of broken parts, you can set max_suspicious_broken_parts_bytes and max_suspicious_broken_parts to 0.

Scenario illustrating / testing

1. Create table

create table t111(A UInt32) Engine=MergeTree order by A settings max_suspicious_broken_parts=1;
insert into t111 select number from numbers(100000);

2. Detach the table and make Data corruption

detach table t111;

cd /var/lib/clickhouse/data/default/t111/all_*** make data file corruption:

> data.bin

repeat for 2 or more data files.

3. Attach the table:

attach table t111;
 
Received exception from server (version 21.12.3):
Code: 231. DB::Exception: Received from localhost:9000. DB::Exception: Suspiciously many (2) broken parts to remove.. (TOO_MANY_UNEXPEC

4. setup force_restrore_data flag

sudo -u clickhouse touch /var/lib/clickhouse/flags/force_restore_data
sudo service clickhouse-server restart

then the table t111 will be attached lost the corrupted data.